Shimadzu Corporation

Protein Sequencer (Gradient/Isocratic) | PPSQ -51A/53A

Shimadzu PPSQ Protein Sequence Analysis System is designed to determine the amino acid sequences of proteins and peptides, combining an Edman reaction segment with a high performance liquid chromatography (HPLC). It comes in two variants, the PPSQ-51A equipped with one reactor and the PPSQ-53A equipped with three reactors.
In PPSQ-53A, continuous analysis of amino acid sequences of multiple samples can be performed one after the other. In the Edman reaction part, amino acids are sequentially cleaved and derived from the N-terminus of a protein by performing Edman degradation. As a result, stable PTH-amino acids are produced. PTH-amino acids are injected into HPLC online and analysis is performed. HPLC data is saved on the computer and data processing software is used to process the chromatograms. Amino acid sequence prediction software is then used to identify amino acids and predict sequences.

Protein Sequencer - PPSQ

Benefits of using Edman Degradation for amino acid sequencing

  • Guaranteed N-terminal sequence of proteins
  • No sample pre-treatment required
  • Differentiation of isobaric amino acids (leucine and isoleucine)
  • Identification possible even from unknown proteins not registered in databases

Protein Sequencing Analysis

Complience with FDA 21 CFR Part 11

LabSolutions PPSQ protein sequence software provides compliance with FDA 21 CFR Part 11 guidelines and ensures compliance with security, user management, and audit trail requirements specified by FDA 21 CFR Part 11.


Simple, Easy-to-Use Data Analysis Functions

Specialized protein sequencer software makes it simple to perform the reprocessing of chromatograms, the overlay of multiple chromatograms, and the automatic estimation of amino acid sequences, which are required for sequence analysis.
  • Reprocessing of chromatograms required for data analysis
  • Overlay of multiple chromatograms
  • Automatic estimation of amino acid sequences
Simple, Easy-to-Use Data Analysis Functions













 


Protein Sequencing - Structure

Using Edman degradation, it derivatizes the amino acids of a protein in order from the N-termini, cleaves the derivatives, and from the HPLC retention times for these cleaved derivatives, identifies the amino acids.













 


Isocratic System in Protein Sequencing

Baseline Stability

PPSQ series protein sequencers separate PTH-amino acids isocratically. This improves baseline stability and allows high-sensitivity analysis of PTH-amino acids.


Retention Time Reproducibility

Isocratic sequence analysis provides more stable retention times. Therefore, peaks detected in previous cycles can be cancelled using substation chromatogram processing, making it easier to identify sequences.

Analytical Stability and Higher Detection







 

Gradient System in Protein Sequencing

High-Sensitivity Analysis

A high-sensitivity flow cell enables high-sensitivity detection of PTH-amino acids, which allows for sequential analysis using trace samples.

        






   


Analysis Stability

Protein Sequencer has high analysis stability because it is equipped with a high-performance detector and a solvent delivery pump that provides excellent pumping performance, even in the micro flowrate range, combine to ensure high analysis stability. Because chromatograms with good reproducibility can be obtained, peaks detected in the previous cycle can be canceled by performing differential chromatogram processing. This enables easy identification of PTH-amino acids even from trace samples.



















 

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